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Spatially Exploring RNA Biology in Archival Formalin-Fixed Paraffin-Embedded Tissues
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Approaches for integrating heterogeneous RNA-seq data reveal cross-talk between microbes and genes in asthmatic patients.
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exceRpt: A Comprehensive Analytic Platform for Extracellular RNA Profiling.
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exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids.
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The Extracellular RNA Communication Consortium: Establishing Foundational Knowledge and Technologies for Extracellular RNA Research.
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Accurate identification and analysis of human mRNA isoforms using deep long read sequencing.
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Landscape of transcription in human cells.
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Understanding transcriptional regulation by integrative analysis of transcription factor binding data.
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The reality of pervasive transcription.
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Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data.
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RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries.
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Discovery of non-ETS gene fusions in human prostate cancer using next-generation RNA sequencing.
D Pflueger, S Terry, A Sboner, L Habegger, R Esgueva, PC Lin, MA Svensson, N Kitabayashi, BJ Moss, TY MacDonald, X Cao, T Barrette, AK Tewari, MS Chee, AM Chinnaiyan, DS Rickman, F Demichelis, MB Gerstein, MA Rubin (2011). Genome Res 21: 56-67.

FusionSeq: a modular framework for finding gene fusions by analyzing paired-end RNA-sequencing data.
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Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays.
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Dynamic and complex transcription factor binding during an inducible response in yeast.
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RNA-Seq: a revolutionary tool for transcriptomics.
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The transcriptional landscape of the yeast genome defined by RNA sequencing.
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Divergence of transcription factor binding sites across related yeast species.
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Global survey of human T leukemic cells by integrating proteomics and transcriptomics profiling.
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Global identification and characterization of transcriptionally active regions in the rice genome.
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