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Novel insights through the integration of structural and functional genomics data with protein networks.
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Comparing genomes to computer operating systems in terms of the topology and evolution of their regulatory control networks.
KK Yan, G Fang, N Bhardwaj, RP Alexander, M Gerstein (2010). Proc Natl Acad Sci U S A 107: 9186-91.
Analysis of membrane proteins in metagenomics: networks of correlated environmental features and protein families.
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Network modeling identifies molecular functions targeted by miR-204 to suppress head and neck tumor metastasis.
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Analysis of diverse regulatory networks in a hierarchical context shows consistent tendencies for collaboration in the middle levels.
N Bhardwaj, KK Yan, MB Gerstein (2010). Proc Natl Acad Sci U S A 107: 6841-6.
Improved reconstruction of in silico gene regulatory networks by integrating knockout and perturbation data.
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Training set expansion: an approach to improving the reconstruction of biological networks from limited and uneven reliable interactions.
KY Yip, M Gerstein (2009). Bioinformatics 25: 243-50.
Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications.
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