The PsychENCODE "rollout" from the Gerstein Lab


Single-cell genomics and regulatory networks for 388 human brains
PS Emani, JJ Liu, D Clarke, M Jensen, J Warrell, C Gupta, R Meng, CY Lee, S Xu, C Dursun, S Lou, Y Chen, Z Chu, T Galeev, A Hwang, Y Li, P Ni, X Zhou, PsychENCODE Consortium, TE Bakken, J Bendl, L Bicks, T Chatterjee, L Cheng, Y Cheng, Y Dai, Z Duan, M Flaherty, JF Fullard, M Gancz, D Garrido-Martin, S Gaynor-Gillett, J Grundman, N Hawken, E Henry, GE Hoffman, A Huang, Y Jiang, T Jin, NL Jorstad, R Kawaguchi, S Khullar, J Liu, J Liu, S Liu, S Ma, M Margolis, S Mazariegos, J Moore, JR Moran, E Nguyen, N Phalke, M Pjanic, H Pratt, D Quintero, AS Rajagopalan, TR Riesenmy, N Shedd, M Shi, M Spector, R Terwilliger, KJ Travaglini, B Wamsley, G Wang, Y Xia, S Xiao, AC Yang, S Zheng, MJ Gandal, D Lee, ES Lein, P Roussos, N Sestan, Z Weng, KP White, H Won, MJ Girgenti, J Zhang, D Wang, D Geschwind, M Gerstein (2024). bioRxiv.

Revealing the brain's molecular architecture.
PsychENCODE Consortium (2018). Science 362: 1262-1263.

Comprehensive functional genomic resource and integrative model for the human brain.
D Wang, S Liu, J Warrell, H Won, X Shi, FCP Navarro, D Clarke, M Gu, P Emani, YT Yang, M Xu, MJ Gandal, S Lou, J Zhang, JJ Park, C Yan, SK Rhie, K Manakongtreecheep, H Zhou, A Nathan, M Peters, E Mattei, D Fitzgerald, T Brunetti, J Moore, Y Jiang, K Girdhar, GE Hoffman, S Kalayci, ZH Gumus, GE Crawford, PsychENCODE Consortium, P Roussos, S Akbarian, AE Jaffe, KP White, Z Weng, N Sestan, DH Geschwind, JA Knowles, MB Gerstein (2018). Science 362.

Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder.
MJ Gandal, P Zhang, E Hadjimichael, RL Walker, C Chen, S Liu, H Won, H van Bakel, M Varghese, Y Wang, AW Shieh, J Haney, S Parhami, J Belmont, M Kim, P Moran Losada, Z Khan, J Mleczko, Y Xia, R Dai, D Wang, YT Yang, M Xu, K Fish, PR Hof, J Warrell, D Fitzgerald, K White, AE Jaffe, PsychENCODE Consortium, MA Peters, M Gerstein, C Liu, LM Iakoucheva, D Pinto, DH Geschwind (2018). Science 362.

Integrative functional genomic analysis of human brain development and neuropsychiatric risks.
M Li, G Santpere, Y Imamura Kawasawa, OV Evgrafov, FO Gulden, S Pochareddy, SM Sunkin, Z Li, Y Shin, Y Zhu, AMM Sousa, DM Werling, RR Kitchen, HJ Kang, M Pletikos, J Choi, S Muchnik, X Xu, D Wang, B Lorente-Galdos, S Liu, P Giusti-Rodriguez, H Won, CA de Leeuw, AF Pardinas, BrainSpan Consortium, PsychENCODE Consortium, PsychENCODE Developmental Subgroup, M Hu, F Jin, Y Li, MJ Owen, MC O'Donovan, JTR Walters, D Posthuma, MA Reimers, P Levitt, DR Weinberger, TM Hyde, JE Kleinman, DH Geschwind, MJ Hawrylycz, MW State, SJ Sanders, PF Sullivan, MB Gerstein, ES Lein, JA Knowles, N Sestan (2018). Science 362.

Transcriptome and epigenome landscape of human cortical development modeled in organoids.
A Amiri, G Coppola, S Scuderi, F Wu, T Roychowdhury, F Liu, S Pochareddy, Y Shin, A Safi, L Song, Y Zhu, AMM Sousa, PsychENCODE Consortium, M Gerstein, GE Crawford, N Sestan, A Abyzov, FM Vaccarino (2018). Science 362.


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