Gerstein Lab Publications

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Material Related to Digital Privacy, esp. Genomic Privacy


Op-eds

http://info.gersteinlab.org/Hartford_Courant_OpEd_from_Other_Papers_for_M_Gerstein

http://info.gersteinlab.org/SF_Chron_OpEd_from_Other_Papers_for_M_Gerstein

http://info.gersteinlab.org/Hartford_Courant_OpEd2_from_Other_Papers_for_M_Gerstein

http://info.gersteinlab.org/USA_Today_Oped_from_Other_Papers_for_M_Gerstein

http://info.gersteinlab.org/SF_Chron_Oped_on_GINA_from_Other_Papers_for_M_Gerstein

Letters to the Editor

http://blog.gerstein.info/2011/11/sharing-too-much-online-letter-re-at.html

http://blog.gerstein.info/2011/07/benefits-of-snooping-letter-re-how-to.html

http://blog.gerstein.info/2010/10/concern-for-privacy-letter-re-dna.html

http://blog.gerstein.info/2010/10/thrills-and-traps-lurking-on-web-letter.html

http://textstream.blogspot.com/2009/11/let-to-ed-re-your-genome-isnt-that.html

http://textstream.blogspot.com/2008/02/let-to-ed-23andmashup-re-23andme-will.html

http://textstream.blogspot.com/2007/09/let-to-ed-re-moms-genes-or-dads-map-can.html

Panel Discussion

http://info.gersteinlab.org/Commonwealth_Club_of_California_from_Other_Papers_for_M_Gerstein


Scientific Writings


Quantification of private information leakage from phenotype-genotype data: linking attacks.
A Harmanci, M Gerstein (2016). Nat Methods 13: 251-6.
website
preprint
medline

Proceed with Caution
D Greenbaum, M Gerstein (2013). The Scientist 27:26 (1 Oct.)
website
preprint
 

Genomics and Privacy: Implications of the New Reality of Closed Data for the Field
D Greenbaum, A Sboner, X J Mu, M Gerstein (2011). PLoS Comput Biol 7: e1002278
 
 
medline

The role of cloud computing in managing the deluge of potentially private genetic data.
D Greenbaum, M Gerstein (2011). Am J Bioeth 11: 39-41.
 
 
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RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries.
L Habegger, A Sboner, TA Gianoulis, J Rozowsky, A Agarwal, M Snyder, M Gerstein (2011). Bioinformatics 27: 281-3.
website
 
medline

Reproducible Research: Addressing the need for data and code sharing in computational science
Yale Law School Roundtable on Data and Code Sharing (2010). Computing in Science & Engineering 12(5): 8-13 (Sept/Oct).
website
 
 

Social networking and personal genomics: suggestions for optimizing the interaction.
D Greenbaum, M Gerstein (2009). Am J Bioeth 9: 15-9.
 
preprint
medline

Genomic anonymity: have we already lost it?
D Greenbaum, J Du, M Gerstein (2008). Am J Bioeth 8: 71-4.
 
preprint
medline

Network security and data integrity in academia: an assessment and a proposal for large-scale archiving.
A Smith, D Greenbaum, SM Douglas, M Long, M Gerstein (2005). Genome Biol 6: 119.
 
preprint
medline

Impediments to database interoperation: legal issues and security concerns.
D Greenbaum, A Smith, M Gerstein (2005). Nucleic Acids Res 33: D3-4.
 
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medline

Computer security in academia-a potential roadblock to distributed annotation of the human genome.
D Greenbaum, SM Douglas, A Smith, J Lim, M Fischer, M Schultz, M Gerstein (2004). Nat Biotechnol 22: 771-2.
 
preprint
medline


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