R01HG010749
NoisyFlow: Differentially Private Optimal Transport Using Neural Networks for Secure Biomedical Data Sharing
Yunyang Li, Nikhil Khandekar, Skylar Wang, Varada Khanna, Julian Sanker, Mark B. Gerstein (2025). bioRxiv.

Quantum variational autoencoder utilizing regularized mixed-state latent representations
G Wang, J Warrell, P S. Emani, and M Gerstein (2024). Phys. Rev. A . 111, 042416

Scalable and efficient on-chain data management in blockchain for large biomedical data
E Ni, E Knight, M Gerstein (2025). J Biomed Inform 165: 104818.

Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases.
PS Emani, MN Geradi, G Gursoy, MR Grasty, A Miranker, MB Gerstein (2023). Genome Res 33: 2156-2173.

Privacy-preserving Model Training for Disease Prediction Using Federated Learning with Differential Privacy.
A Khanna, V Schaffer, G Gursoy, M Gerstein (2022). Annu Int Conf IEEE Eng Med Biol Soc 2022: 1358-1361.

Storing and analyzing a genome on a blockchain.
G Gursoy, CM Brannon, E Ni, S Wagner, A Khanna, M Gerstein (2022). Genome Biol 23: 134.

Fast and Scalable Private Genotype Imputation Using Machine Learning and Partially Homomorphic Encryption.
E Sarkar, E Chielle, G Gursoy, O Mazonka, M Gerstein, M Maniatakos (2021). IEEE Access 9: 93097-93110.

Functional genomics data: privacy risk assessment and technological mitigation.
G Gursoy, T Li, S Liu, E Ni, CM Brannon, MB Gerstein (2021). Nat Rev Genet 23: 245-258.

Privacy-preserving genotype imputation with fully homomorphic encryption.
G Gursoy, E Chielle, CM Brannon, M Maniatakos, M Gerstein (2021). Cell Syst 13: 173-182e3.

Recovering genotypes and phenotypes using allele-specific genes.
G Gursoy, N Lu, S Wagner, M Gerstein (2021). Genome Biol 22: 263.

Data Sanitization to Reduce Private Information Leakage from Functional Genomics.
G Gursoy, P Emani, CM Brannon, OA Jolanki, A Harmanci, JS Strattan, JM Cherry, AD Miranker, M Gerstein (2020). Cell 183: 905-917e16.

FANCY: fast estimation of privacy risk in functional genomics data.
G Gursoy, CM Brannon, FCP Navarro, M Gerstein (2020). Bioinformatics 36: 5145-5150.

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