Gerstein Lab Publications

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Development of a Database of Protein Motions and Associated Tools for Automatic Conformation Comparison
DBI-9723182 (PI M Gerstein)
8/1/97-7/31/01

The goal of this project was to build a database of protein motions.


URL: https://www.fastlane.nsf.gov/servlet/showaward?award=9723182
Articles funded by this grant:
Tools and databases to analyze protein flexibility; approaches to mapping implied features onto sequences.
WG Krebs, J Tsai, V Alexandrov, J Junker, R Jansen, M Gerstein (2003). Methods Enzymol 374: 544-84.
website
preprint
medline

MolMovDB: analysis and visualization of conformational change and structural flexibility.
N Echols, D Milburn, M Gerstein (2003). Nucleic Acids Res 31: 478-82.
website
preprint
medline

Calculations of protein volumes: sensitivity analysis and parameter database.
J Tsai, M Gerstein (2002). Bioinformatics 18: 985-95.
website
preprint
medline

Normal mode analysis of macromolecular motions in a database framework: developing mode concentration as a useful classifying statistic.
WG Krebs, V Alexandrov, CA Wilson, N Echols, H Yu, M Gerstein (2002). Proteins 48: 682-95.
website
preprint
medline

The packing density in proteins: standard radii and volumes.
J Tsai, R Taylor, C Chothia, M Gerstein (1999). J Mol Biol 290: 253-66.
 
preprint
medline


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