Deep Inside Champions, Just Genes?
D Greenbaum, J Chen, M Gerstein (2013). Science 342: 560.

Genomics and Privacy: Implications of the New Reality of Closed Data for the Field
D Greenbaum, A Sboner, X J Mu, M Gerstein (2011). PLoS Comput Biol 7: e1002278

The real cost of sequencing: higher than you think!
A Sboner, XJ Mu, D Greenbaum, RK Auerbach, MB Gerstein (2011). Genome Biol 12: 125.

Annotating non-coding regions of the genome.
RP Alexander, G Fang, J Rozowsky, M Snyder, MB Gerstein (2010). Nat Rev Genet 11: 559-71.

Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response.
M Zhong, W Niu, ZJ Lu, M Sarov, JI Murray, J Janette, D Raha, KL Sheaffer, HY Lam, E Preston, C Slightham, LW Hillier, T Brock, A Agarwal, R Auerbach, AA Hyman, M Gerstein, SE Mango, SK Kim, RH Waterston, V Reinke, M Snyder (2010). PLoS Genet 6: e1000848.

Genomics Confounds Gene Classification
M Seringhaus, M Gerstein (2008). American Scientist 96:466-473 (Nov-Dec)

Genomics: protein fossils live on as RNA.
R Sasidharan, M Gerstein (2008). Nature 453: 729-31.

What is a gene, post-ENCODE? History and updated definition.
MB Gerstein, C Bruce, JS Rozowsky, D Zheng, J Du, JO Korbel, O Emanuelsson, ZD Zhang, S Weissman, M Snyder (2007). Genome Res 17: 669-81.

The real life of pseudogenes.
M Gerstein, D Zheng (2006). Sci Am 295: 48-55.

Genomics. Defining genes in the genomics era.
M Snyder, M Gerstein (2003). Science 300: 258-60.

Studying genomes through the aeons: protein families, pseudogenes and proteome evolution.
PM Harrison, M Gerstein (2002). J Mol Biol 318: 1155-74.

Proteomics. Integrating interactomes.
M Gerstein, N Lan, R Jansen (2002). Science 295: 284-7.

Integrative data mining: the new direction in bioinformatics.
P Bertone, M Gerstein (2001). IEEE Eng Med Biol Mag 20: 33-40.

Integrative database analysis in structural genomics.
M Gerstein (2000). Nat Struct Biol 7 Suppl: 960-3.

Perspectives: signal transduction. Proteins in motion.
M Gerstein, C Chothia (1999). Science 285: 1682-3.

E-publishing on the Web: promises, pitfalls, and payoffs for bioinformatics.
M Gerstein (1999). Bioinformatics 15: 429-31.

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