Volumes

Gerstein Lab Publications

Main • By Subject • Queries • Code • Other Writings

Relating protein conformational changes to packing efficiency and disorder.

N Bhardwaj, M Gerstein (2009). Protein Sci 18:1230-40.

Helix Interaction Tool (HIT): a web-based tool for analysis of helix-helix interactions in proteins.

AE Burba, U Lehnert, EZ Yu, M Gerstein (2006). Bioinformatics 22:2735-8.

The geometry of the ribosomal polypeptide exit tunnel.

NR Voss, M Gerstein, TA Steitz, PB Moore (2006). J Mol Biol 360:893-906.

Calculation of standard atomic volumes for RNA and comparison with proteins: RNA is packed more tightly.

NR Voss, M Gerstein (2005). J Mol Biol 346:477-92.

Calculations of protein volumes: sensitivity analysis and parameter database.

J Tsai, M Gerstein (2002). Bioinformatics 18:985-95.

Determining the minimum number of types necessary to represent the sizes of protein atoms.

J Tsai, N Voss, M Gerstein (2001). Bioinformatics 17:949-56.

Protein Geometry: Distances, Areas, and Volumes

M Gerstein, F M Richards (2001). International Tables for Crystallography (Volume F, Chapter 22.1.1, pages 531-539; M Rossmann & E Arnold, editors; Dordrecht: Kluwer)

The packing density in proteins: standard radii and volumes.

J Tsai, R Taylor, C Chothia, M Gerstein (1999). J Mol Biol 290:253-66.

Packing at the protein-water interface.

M Gerstein, C Chothia (1996). Proc Natl Acad Sci U S A 93:10167-72.

Volume changes on protein folding.

Y Harpaz, M Gerstein, C Chothia (1994). Structure 2:641-9.

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