Gerstein Lab Publications
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These constitute a good selection of papers to introduce one to the lab and the general field of bioinformatics. They are focused on someone with a CS background. Specific fields are highlighted - Networks
- PM Kim, JO Korbel, MB Gerstein (2007), PM Kim, LJ Lu, Y Xia, MB Gerstein (2006), LJ Lu, Y Xia, A Paccanaro, H Yu, M Gerstein (2005), H Yu, PM Kim, E Sprecher, V Trifonov, M Gerstein (2007)
- Social Networks
- H Yu, M Gerstein (2006), SM Douglas, GT Montelione, M Gerstein (2005)
- Representative Web tools
- KH Cheung, KY Yip, A Smith, R Deknikker, A Masiar, M Gerstein (2005), KY Yip, H Yu, PM Kim, M Schultz, M Gerstein (2006), KY Yip, P Patel, PM Kim, DM Engelman, D McDermott, M Gerstein (2008)
- Semanic web and knowledge representation
- A Smith, K Cheung, M Krauthammer, M Schultz, M Gerstein (2007), H Yu, R Jansen, G Stolovitzky, M Gerstein (2007)
- Genome annotation + mining (very computationally oriented)
- TE Royce, JS Rozowsky, MB Gerstein (2007), ZD Zhang, A Paccanaro, Y Fu, S Weissman, Z Weng, J Chang, M Snyder, MB Gerstein (2007), Z Zhang, N Carriero, D Zheng, J Karro, PM Harrison, M Gerstein (2006), J Du, JS Rozowsky, JO Korbel, ZD Zhang, TE Royce, MH Schultz, M Snyder, M Gerstein (2006), TE Royce, NJ Carriero, MB Gerstein (2007)
- Motions and simulation
- S Flores, N Echols, D Milburn, B Hespenheide, K Keating, J Lu, S Wells, EZ Yu, M Thorpe, M Gerstein (2006)
- Easy to read things
- A Smith, M Gerstein (2006), M Gerstein, D Zheng (2006), M Gerstein, M Levitt (1998)
KY Yip, P Patel, PM Kim, DM Engelman, D McDermott, M Gerstein (2008). Bioinformatics 24:290-2.
PM Kim, JO Korbel, MB Gerstein (2007). Proc Natl Acad Sci U S A 104:20274-9.
A Smith, K Cheung, M Krauthammer, M Schultz, M Gerstein (2007). Bioinformatics 23:3073-9.
TE Royce, JS Rozowsky, MB Gerstein (2007). Nucleic Acids Res 35:e99.
ZD Zhang, A Paccanaro, Y Fu, S Weissman, Z Weng, J Chang, M Snyder, MB Gerstein (2007). Genome Res 17:787-97.
TE Royce, NJ Carriero, MB Gerstein (2007). BMC Bioinformatics 8:186.
H Yu, R Jansen, G Stolovitzky, M Gerstein (2007). Bioinformatics 23:2163-73.
H Yu, PM Kim, E Sprecher, V Trifonov, M Gerstein (2007). PLoS Comput Biol 3:e59.
PM Kim, LJ Lu, Y Xia, MB Gerstein (2006). Science 314:1938-41.
A Smith, M Gerstein (2006). Science 314:1682; author reply 1682.
J Du, JS Rozowsky, JO Korbel, ZD Zhang, TE Royce, MH Schultz, M Snyder, M Gerstein (2006). Bioinformatics 22:3016-24.
KY Yip, H Yu, PM Kim, M Schultz, M Gerstein (2006). Bioinformatics 22:2968-70.
H Yu, M Gerstein (2006). Proc Natl Acad Sci U S A 103:14724-31.
M Gerstein, D Zheng (2006). Sci Am 295:48-55.
Z Zhang, N Carriero, D Zheng, J Karro, PM Harrison, M Gerstein (2006). Bioinformatics 22:1437-9.
S Flores, N Echols, D Milburn, B Hespenheide, K Keating, J Lu, S Wells, EZ Yu, M Thorpe, M Gerstein (2005). Nucleic Acids Res 34:D296-301.
SM Douglas, GT Montelione, M Gerstein (2005). Genome Biol 6:R80.
LJ Lu, Y Xia, A Paccanaro, H Yu, M Gerstein (2005). Genome Res 15:945-53.
KH Cheung, KY Yip, A Smith, R Deknikker, A Masiar, M Gerstein (2005). Bioinformatics 21 Suppl 1:i85-96.
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