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Inter-relating Functional Genomics Features [interrelate]
2007 snippet describing some of the lab's work in analyzing functional genomics and proteomics data [html] [doc]
- PARE: a tool for comparing protein abundance and mRNA expression data.
- EZ Yu, AE Burba, M Gerstein (2007) BMC Bioinformatics 8: 309.
- Predicting essential genes in fungal genomes.
- M Seringhaus, A Paccanaro, A Borneman, M Snyder, M Gerstein (2006) Genome Res 16: 1126-35.
- YeastHub: a semantic web use case for integrating data in the life sciences domain.
- KH Cheung, KY Yip, A Smith, R Deknikker, A Masiar, M Gerstein (2005) Bioinformatics 21 Suppl 1: i85-96.
- An XML-Based Approach to Integrating Heterogeneous Yeast Genome Data
- KH Cheung, D Pan, A Smith, M Seringhaus, SM Douglas, M Gerstein. 2004 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences (METMBS); pp 236-242.
- Comparing protein abundance and mRNA expression levels on a genomic scale.
- D Greenbaum, C Colangelo, K Williams, M Gerstein (2003) Genome Biol 4: 117.
- Revisiting the codon adaptation index from a whole-genome perspective: analyzing the relationship between gene expression and codon occurrence in yeast using a variety of models.
- R Jansen, HJ Bussemaker, M Gerstein (2003) Nucleic Acids Res 31: 2242-51.
- Spectral biclustering of microarray data: coclustering genes and conditions.
- Y Kluger, R Basri, JT Chang, M Gerstein (2003) Genome Res 13: 703-16.
- Analysis of mRNA expression and protein abundance data: an approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts.
- D Greenbaum, R Jansen, M Gerstein (2002) Bioinformatics 18: 585-96.
- Beyond synexpression relationships: local clustering of time-shifted and inverted gene expression profiles identifies new, biologically relevant interactions.
- J Qian, M Dolled-Filhart, J Lin, H Yu, M Gerstein (2001) J Mol Biol 314: 1053-66.
- Genome-wide analysis relating expression level with protein subcellular localization.
- A Drawid, R Jansen, M Gerstein (2000) Trends Genet 16: 426-30.
- Analysis of the yeast transcriptome with structural and functional categories: characterizing highly expressed proteins.
- R Jansen, M Gerstein (2000) Nucleic Acids Res 28: 1481-8.
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