Gerstein Lab Publications

E-publishing and scientific communication [epublishing]

Seeking a new biology through text mining.
A Rzhetsky, M Seringhaus, M Gerstein (2008) Cell 134: 9-13.
Open access: taking full advantage of the content.
PE Bourne, JL Fink, M Gerstein (2008) PLoS Comput Biol 4: e1000037.
Manually structured digital abstracts: a scaffold for automatic text mining.
M Seringhaus, M Gerstein (2008) FEBS Lett 582: 1170.
Uncovering trends in gene naming.
MR Seringhaus, PD Cayting, MB Gerstein (2008) Genome Biol 9: 401.
Semantic Web Approach to Database Integration in the Life Sciences
KH Cheung, AK Smith, KYL Yip, CJO Baker, MB Gerstein (2007) in Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences (eds. C Baker and K Cheung, Springer, NY), pp. 11-30.
Semantic Web Standards: Legal and Social Issues and Implications
D Greenbaum, M Gerstein (2007) in Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences (eds. C Baker and K Cheung, Springer, NY), pp. 413-433.
Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics.
A Smith, K Cheung, M Krauthammer, M Schultz, M Gerstein (2007) Bioinformatics 23: 3073-9.
Structured digital abstract makes text mining easy.
M Gerstein, M Seringhaus, S Fields (2007) Nature 447: 142.
RNAi development.
M Gerstein, SM Douglas (2007) PLoS Comput Biol 3: e80.
Publishing perishing? Towards tomorrow's information architecture.
MR Seringhaus, MB Gerstein (2007) BMC Bioinformatics 8: 17.
Chemistry Nobel rich in structure.
M Seringhaus, M Gerstein (2007) Science 315: 40-1.
The Death of the Scientific Paper
Seringhaus M, Gerstein M (2006). The Scientist. 20(9): 25.
Data mining on the web.
A Smith, M Gerstein (2006) Science 314: 1682; author reply 1682.
Tools needed to navigate landscape of the genome.
M Gerstein (2006) Nature 440: 740.
Network security and data integrity in academia: an assessment and a proposal for large-scale archiving.
A Smith, D Greenbaum, SM Douglas, M Long, M Gerstein (2005) Genome Biol 6: 119.
PubNet: a flexible system for visualizing literature derived networks.
SM Douglas, GT Montelione, M Gerstein (2005) Genome Biol 6: R80.
Computer security in academia-a potential roadblock to distributed annotation of the human genome.
D Greenbaum, SM Douglas, A Smith, J Lim, M Fischer, M Schultz, M Gerstein (2004) Nat Biotechnol 22: 771-2.
An analysis of the present system of scientific publishing: what's wrong and where to go from here
D Greenbaum, J Lim, M Gerstein (2003) Interdiscip Sci Rev 28: 293-302.
A universal legal framework as a prerequisite for database interoperability.
D Greenbaum, M Gerstein (2003) Nat Biotechnol 21: 979-82.
Blurring the boundaries between scientific 'papers' and biological databases
M Gerstein, J Junker (2002) Nature Yearbook of Science and Technology 210-212 (ed. D Butler, Palgrave Macmillan Publishers).
Annotation of the human genome.
M Gerstein (2000) Science 288: 1590.
E-publishing on the Web: promises, pitfalls, and payoffs for bioinformatics.
M Gerstein (1999) Bioinformatics 15: 429-31.
Forging links in an electronic paper chain.
M Gerstein (1999) Nature 398: 20.
Purcell's early work on NMR: Contingency versus Inevitability
M Gerstein (1994) American Journal of Physics 62: 596-601.

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