#This file shows the SNPs on chromosome 22 mapped on to pseudogenes obtained from homology matches to SWISS-PROT sequences #aabegin and aaend are the start and end of the homology matches to proteins in SWISS-PROT #aav1 and aav2 are the amino acid variants due to the two allelic SNPs. This includes both silent and nonsynonymous changes. snpid swp_match chr22start chr22end snppos frame aabegin aaend aav1 aav2 15068 GC2_HUMAN 6816796 6817122 6816990 + 6 112 Tyr Stop 27307 KV6I_MOUSE 6678416 6678694 6678530 + 4 96 Thr Ala 53413 LV2D_HUMAN 6275823 6275933 6275919 + 13 50 Thr Ala 61247 CYB_AMBCI 16793293 16793556 16793411 - 22 109 Ser Ile 66404 CYB_AMBCI 16793293 16793556 16793544 - 22 109 Asn Tyr 81979 CA15_HUMAN 33281576 33282172 33281917 - 899 1109 Arg Gly 81980 CA15_HUMAN 33281576 33282172 33281895 - 899 1109 Trp Leu 90315 LV6E_HUMAN 6304011 6304538 6304212 + 1 126 Ser Ala 106711 NAH3_HUMAN 4580893 4582740 4581170 + 72 707 Cys Tyr 107503 DNJ1_ALLPO 1940941 1941630 1941464 - 146 383 Pro His 107591 PI10_HUMAN 4381609 4382625 4382545 + 133 477 Val Ile 108228 LV6E_HUMAN 6304011 6304538 6304132 + 1 126 Ile Thr 109871 CA11_CHICK 33318984 33319496 33319482 + 375 545 Gly Ser 110362 ACON_PIG 18488017 18489030 18488849 - 210 547 Leu Pro 110755 HDA1_YEAST 34046804 34047214 34047054 - 201 282 Arg Gln 110756 HDA1_YEAST 34046804 34047214 34047055 - 201 282 Gln Stop 116516 KICE_HUMAN 34328947 34329066 34329047 - 356 395 Pro Leu 118348 R15A_PICMA 10853905 10854339 10854323 - 60 204 Arg His 153792 TBA1_CHLRE 4995567 4996004 4995673 + 210 355 Asp Val 201150 DIA1_HUMAN 32997881 32998243 32998008 - 604 728 Leu Pro 205434 ACON_PIG 18488017 18489030 18488781 - 210 547 Pro Thr 209751 DIA1_HUMAN 32997881 32998243 32997929 - 604 728 Met Ile 210903 P2X6_HUMAN 4972802 4972936 4972908 - 1 45 Stop Trp 213287 TIE1_MOUSE 4361556 4362053 4361767 - 226 347 Asn Thr 213609 N121_RAT 2871119 2872114 2871759 - 209 577 Leu Ser 213610 N121_RAT 2871119 2872114 2871779 - 209 577 His Gln 213611 N121_RAT 2871119 2872114 2871798 - 209 577 Gly Ala 213612 N121_RAT 2871119 2872114 2871799 - 209 577 Stop Gln 228790 RPB1_ARATH 27656063 27656833 27656440 + 1544 1800 Asp Glu 228791 RPB1_ARATH 27656063 27656833 27656445 + 1544 1800 Ala Val 228792 RPB1_ARATH 27656063 27656833 27656524 + 1544 1800 Asp Glu 228793 RPB1_ARATH 27656063 27656833 27656529 + 1544 1800 Ala Val 228794 RPB1_ARATH 27656063 27656833 27656544 + 1544 1800 Ser Stop 245997 KV6I_MOUSE 6678416 6678694 6678425 + 4 96 Pro Ser 310025 Z132_HUMAN 1283777 1283968 1283911 - 220 278 Ala Thr 310026 Z135_HUMAN 1283986 1284228 1284081 - 212 289 Tyr Asn 398190 GC2_HUMAN 6816796 6817122 6817025 + 6 112 Lys Arg 417518 GC2_HUMAN 6816796 6817122 6817115 + 6 112 His Pro 444775 CPA2_RAT 25945811 25946056 25945950 - 324 406 His Arg 470845 HIP_HUMAN 24661643 24661780 24661701 - 82 127 Leu Ser 846058 TBA1_ANEPH 4936689 4937372 4936813 - 126 355 Gly Ala 1235120 ZN91_HUMAN 594546 596639 596370 + 87 780 Met Val 1235121 ZN91_HUMAN 596653 597537 596666 + 786 1102 Thr Arg 1235122 ZN91_HUMAN 596653 597537 596774 + 786 1102 Phe Tyr 1295498 APL_HUMAN 20036770 20037561 20037152 - 103 379 Arg His 1295680 DNJ1_ALLPO 1940941 1941630 1941511 - 146 383 Arg Ser 1296797 LI12_CAEEL 4362118 4362729 4362498 - 220 473 Ser Pro 1297882 CSP_PLAYO 4037256 4037681 4037265 + 111 247 Pro Ser 1322901 ATP8_RABIT 20019721 20019903 20019879 + 1 61 Met Ile 1331546 CPD9_MOUSE 25944991 25945188 25945034 - 438 503 Thr Ser 1335434 HVC2_HETFR 6835347 6835553 6835479 + 108 176 Ala Thr 1335867 NF1_HUMAN 296446 296877 296843 + 808 951 Pro Arg 1336772 ZN91_HUMAN 594546 596639 596299 + 87 780 Stop Leu 1371643 DIA1_HUMAN 32997881 32998243 32998168 - 604 728 Cys Arg 1402709 PI10_HUMAN 4381609 4382625 4382228 + 133 477 Gly Val 1404580 N121_RAT 5210861 5211850 5211416 + 278 638 Arg Cys 1407921 VA55_VACCC 7840893 7841810 7841112 + 110 402 Ile Val 1409283 CRB1_BOVIN 9196437 9196631 9196563 + 145 216 Arg Trp 1409284 CRB1_BOVIN 9196437 9196631 9196570 + 145 216 Gln Arg 1543649 ZF35_MOUSE 27398642 27399859 27399837 + 122 574 His Arg 1559788 PABP_DROME 848910 849038 849033 + 55 97 Lys Gln 1559809 PAB1_HUMAN 850080 850811 850131 + 332 573 Thr Ala 1559819 PAB1_HUMAN 850080 850811 850456 + 332 573 Ala Val 1559820 PAB1_HUMAN 850080 850811 850458 + 332 573 Stop Gln 1625129 RPB1_ARATH 27656063 27656833 27656109 + 1544 1800 Ala Val 1662562 RL5_HUMAN 26581181 26582068 26581258 - 1 296 Ser Pro 1728583 CA11_CHICK 33318984 33319496 33319129 + 375 545 Glu Gly 1783038 RS3A_APLCA 14035049 14035561 14035449 - 92 264 Ile Thr 1783161 AL_DROME 18980790 18981047 18980868 + 51 131 Thr Pro 81981 CA15_HUMAN 33281576 33282172 33281696 - 899 1109 Gly Gly 108227 LV6E_HUMAN 6304011 6304538 6304262 + 1 126 Leu Leu 115431 PAB1_HUMAN 850080 850811 850520 + 332 573 Lys Lys 117953 G3P2_HUMAN 24490357 24491142 24490639 - 60 334 His His 118112 CYB_ANTAM 20021884 20022219 20022048 + 267 378 Ser Ser 118113 CYB_ANTAM 20021884 20022219 20022057 + 267 378 Leu Leu 153791 TBA1_CHLRE 4995567 4996004 4995671 + 210 355 Phe Phe 206865 TYPH_HUMAN 34276007 34276552 34276196 - 239 387 Ala Ala 310023 Z132_HUMAN 1282789 1283721 1283641 - 286 560 Thr Thr 310024 Z132_HUMAN 1283777 1283968 1283849 - 220 278 Lys Lys 370776 NAH3_HUMAN 4580893 4582740 4581051 + 72 707 Lys Lys 417461 GC2_HUMAN 6822152 6822478 6822460 + 6 112 Leu Leu 417517 GC2_HUMAN 6816796 6817122 6817101 + 6 112 Val Val 440842 HDA1_YEAST 34046804 34047214 34047167 - 201 282 Cys Cys 849047 TC17_MOUSE 4331778 4332233 4331957 + 11 157 Leu Leu 922514 LV1H_HUMAN 6271398 6271727 6271655 + 1 107 Glu Glu 1106470 GC2_HUMAN 6822152 6822478 6822346 + 6 112 Tyr Tyr 1111535 Z135_HUMAN 1283986 1284228 1283989 - 212 289 Ser Ser 1181293 ARP2_HUMAN 8654591 8655112 8654971 + 218 394 Ile Ile 1186819 GC2_HUMAN 6816796 6817122 6816990 + 6 112 Tyr Tyr 1235123 ZN91_HUMAN 596653 597537 597078 + 786 1102 Ala Ala 1295497 APL_HUMAN 20036770 20037561 20037127 - 103 379 Ser Ser 1296798 LI12_CAEEL 4362118 4362729 4362523 - 220 473 Pro Pro 1763760 PAB1_HUMAN 850080 850811 850178 + 332 573 Tyr Tyr 1794170 N121_RAT 2871119 2872114 2871769 - 209 577 Arg Arg