All the files are in this PRIVATE web directory, http://bioinfo.mbb.yale.edu/e-print/partslist-nar . Text file: parstlist-text-Word2000.doc text (no figures or tables), in MS Word 2000 format Figure and Table directory: figures-dir please make sure table 1 is Reset as a simple table =============================================== Other supplementary files: partslist-all.pdf everything, pdf, good figures and tables. partslist-text.pdf text (no figures or tables) in pdf format parstlist-text-Word95.doc text (no figures or tables), in MS Word 95 format partslist-text.rtf text (no figures or tables), in Microsoft Word RTF format partslist-figures.pdf Figures and tables in PDF format. figures-dir Has .pdf, .jpg, .psd, and .xls files for the individual figures in Adobe Acrobat, JPEG, Adobe PhotoShop 5.0 extra/ErrorAnalysisWebPage.html This is the Web page for the error analysis, located at http://bioinfo.mbb.yale.edu/align/help/errors.html extra/partslist-CHANGES.doc This is the revision document. It shows the changes that have been made to the document from the version submitted to the referees. This is a Microsoft Word 2000 document. readme.txt this file Everything in the manuscript should be accessible in electronic form. Please contact me at Mark.Gerstein@yale.edu if there are any difficulties.